# coolpup.py CLI

Use `coolpup.py` command to perform pileups, and `plotpup.py` to visualize them.

## Submodules

## coolpup.py command

```{eval-rst}
.. argparse::
   :module: coolpuppy.CLI
   :func: parse_args_coolpuppy
   :prog: coolpup.py
```

## dividepups.py command

```{eval-rst}
.. argparse::
   :module: coolpuppy.divide_pups_CLI
   :func: parse_args_divide_pups
   :prog: dividepups.py
```

## plotpup.py command

```{eval-rst}
.. argparse::
   :module: coolpuppy.plotpuppy_CLI
   :func: parse_args_plotpuppy
   :prog: plotpup.py
```